Tree of Life Profile
In COPO, a Tree of Life (ToL) [1] work profile [2] is required to submit research objects [3] such as samples, barcoding manifests, sequence annotations, reads, assemblies and files.
A ToL profile can be used to create one of the following biodiversity projects:
Aquatic Symbiosis Genomics (ASG)
European Reference Genome Atlas (ERGA)
Darwin Tree of Life Environmental (DTOL_ENV)
Darwin Tree of Life (DTOL)
See also
Steps to Create a Tree of Life Profile
-
Click the Add new record icon to view the Add Profile form
-
Contact COPO via email dialogue is displayed indicating that the user is not a member of any manifest group and that the user must make a request to be added to a manifest group to make ToL manifest submissions if the user would like to do so.
Click Okay to close the dialogue.
Provide Profile Title & Description
-
In the Add Profile form dialogue, provide details for the new profile then, click Save
Note
The Profile Type dropdown menu by default will only display the Stand-alone option.
If your desired profile type is not displayed in the Profile Type dropdown menu, indicating the type of profile group that you would like to be granted access to. Thereafter, the desired profile type option will be displayed in the dropdown menu.
Hint
Both profile Title and profile Description are mandatory form fields.
Meaningful field values are recommended in the form boxes because the information will appear in submissions of the research objects associated with the profile, in public remote repositories.
Choose Profile Type
If you request to be added to any of the profile types displayed (excluding the default Stand-alone profile type), only that profile type will be listed in the Profile type dropdown menu.
Choose Associated Profile Type(s) (if required)
Note
The Associated Profile Type dropdown menu will only display if the European Reference Genome Atlas (ERGA) profile type is selected.
More than one associated type also known as subproject or child project can be chosen.
OR
OR
Choose Sequencing Centre (if required)
Note
The Sequencing Centre dropdown menu will only display if the European Reference Genome Atlas (ERGA) profile type is selected.
Profile created
-
The new profile will be displayed in the Profile list
Hint
The list of profiles or profile records on the Work Profiles web page can be sorted by date created, profile title or profile type.
Choose the desired sort type from the Sort by dropdown menu (at the top-right of the profile record).
See more information in the Sorting Profiles section.
See also
See Steps to create Stand-alone profile if you would like to make other submissions
Tree of Life Profile Components
A COPO profile [2] defines a set of component types from which instances of research objects can be created.
The following component types are currently defined:
Component instances defined within a profile will only be visible within that profile.
To access a component within a profile, click the component button displayed within the popup after the button was clicked (see the screenshot above).
Footnotes