COPO: Guidelines
Welcome to the guidelines for submission, updates and retrieval for the Collaborative OPen Omics project. Please use the links to find instructions specific to your needs.
Getting Started
- Getting Started
- Projects Brokered through COPO
- New User
- Sample Managers
COPO Profile
COPO Data Submission
COPO Data Updates
COPO Data Discovery & Retrieval
- Downloading Manifest Templates & Standard Operating Procedures (SOPs)
-
Using COPO API
-
API End-points
-
Audit Endpoints
- Fetch Sample Updates Between Dates
- Fetch Sample Updates by Manifest ID
- Fetch Sample Updates by COPO ID
- Fetch Sample Updates by Update Type
- Fetch Sample Updates by Field and Field Value
- Fetch Sample Updates by ASG Sample Type
- Fetch Sample Updates by DTOL Sample Type
- Fetch Sample Updates by ERGA Sample Type
- Manifest Endpoints
-
Sample Endpoints
- Fetch Sample Records by Project
- Fetch Sample Records by Associated Project Type
- Fetch Sample Records between Dates
- Fetch Sample Records between Dates
- Fetch Updatable Fields by Project
- Fetch Sample Records by COPO ID
- Fetch Sample Records by Biosample ID
- Fetch Sample Records by Field and Values
- Fetch Study Records by Sample ID
- Fetch Sample Records by Study ID
- Profile Endpoints
- Statistics’ Endpoints
-
Audit Endpoints
-
API End-points
- Exploring Manifest Wizard
- Tree of Life Dashboard
- Retrieving Accessions
- COPO Statistics
- Manifest Checklist
Advanced
- Setting Up COPO Project Locally with Docker
-
Setting Up COPO Project Locally without Docker
-
Set Up COPO Project on Linux
- Install Python
- Install Python Development Tools
- Install Required Packages
- Install Integrated Development Environment (IDE)
- Configure IDE
- Declare Environment Variables
- Set up Python virtual environment
- Set Up Mongo Database in COPO Project
- Set Up PostgreSQL Database in COPO Project
- Launch COPO Website
- Set Up COPO Project on Windows
-
Set Up COPO Project on Linux